Journal: Biomolecules
Article Title: CTCF Regulates Erythroid Differentiation Through Control of Core Erythroid Transcription Factors
doi: 10.3390/biom16040549
Figure Lengend Snippet: Constitutive and inducible CTCF downregulation inhibits erythroid differentiation in CD34 + cells. ( A ) CTCF expression was analyzed by RT-qPCR in CD34 + cells following infection with pLKO empty vector (EV) or pLKO shCTCF lentiviruses and puromycin selection for two days. Expression levels were normalized to RPS14 . Data represent mean ± SD ( n = 6). *** p < 0.001 by two-tailed one-sample t -test. ( B ) Benzidine staining of CD34 + cells infected with pLKO empty vector (EV) or pLKO shCTCF and treated with 3 U/mL erythropoietin (EPO) for 10 days. In each experiment, a minimum of 200 cells were counted, and the percentage of benzidine-positive cells is shown. Data represent mean ± SD ( n = 3). ** p < 0.01, *** p < 0.001, **** p < 0.0001 by two-way ANOVA followed by Tukey’s post hoc multiple-comparisons test. ( C ) Percentage of glycophorin A-positive cells analyzed by flow cytometry after infection of CD34 + cells with pLKO empty vector (EV) or pLKO shCTCF and treatment with 3 U/mL erythropoietin (EPO) for 5 days. Data represent mean ± SD ( n = 3). ** p < 0.01 by two-way ANOVA. ( D ) Protein expression of γ-globin and GATA1 was analyzed by Western blot in CD34 + cells following infection with pLKO empty vector (EV) or pLKO shCTCF and treatment with 3 U/mL erythropoietin (EPO) for 5 days. Protein signal quantification was normalized to the loading control (actin). ( E ) CTCF expression was analyzed by RT-qPCR in CD34 + cells following infection with inducible pTRIPZ shCTCF lentiviruses, two days of puromycin selection, and two days of induction with 2 µg/mL doxycycline. Expression levels were normalized to RPS14. Data represent mean ± SD ( n = 3). * p < 0.05 by two-tailed one-sample t -test. ( F ) Benzidine staining of CD34 + cells infected with inducible pTRIPZ empty vector (EV) or pTRIPZ shCTCF, as described in ( E ), and treated with 3 U/mL erythropoietin (EPO) for 5 days. In each experiment, a minimum of 200 cells were counted, and the percentage of benzidine-positive cells is shown. Data represent mean ± SD ( n = 3). * p < 0.05 by two-way ANOVA. ( G ) Protein expression of γ-globin and GATA1 was analyzed by Western blot in CD34 + cells following infection with inducible pTRIPZ empty vector (EV) or pTRIPZ shCTCF, as described in ( E ), and treatment with erythropoietin (EPO) for 5 days. Protein signal quantification was normalized to the loading control (actin). All original Western blot images can be found in the .
Article Snippet: Primary CD34 + cells were obtained from human umbilical cord blood kindly donated by the Blood and Tissue Bank of Cantabria with approval from the local ethics committee (Ethics Committee on Clinical Research of Cantabria; Santander, Spain).
Techniques: Expressing, Quantitative RT-PCR, Infection, Plasmid Preparation, Selection, Two Tailed Test, Staining, Flow Cytometry, Western Blot, Control